One of the most controversial issues about the political thought of the founder of the Islamic Republic is the difference between his political thought in the 20s and 30s with 40s AH onwards. Especially in the two books of "Kashf e Asrar", that he believes in a kind of supervision of the Faqih over the political structure and in the book "Velayat-e-Faqih", that he proves the necessity of an Islamic government led by a Fqih. Based on this, an important question arises. Should we not follow the idea of the Islamic government in the book " Kashf e Asrar " in the sense explained in the book "Velayat-e-Faqih"? Many researchers have answered this question in the affirmative from different perspectives. But the findings of the present study, which are mainly based on the study of theoretical and historical contexts, show that, in fact, it has not occurred a fundamental change in the political thought of Ayatollah Khomeini and the idea of Islamic government, which is explained in the book "Velayat-e-Faqih", can also be found in the book " Kashf e Asrar ", of course not explicitly. This lack of explicitness has been mainly due to historical, political and religious reasons.